ba_germplasm_search: ba_germplasm_search

In c5sire/brapi: Client to Access Breeding Databases Using BrAPI

Description

Retrieve germplasm information as result of a GET search.

Usage

ba_germplasm_search(con = NULL, germplasmPUI = "",
  germplasmDbId = "", germplasmName = "", commonCropName = "",
  pageSize = 1000, page = 0, rclass = c("tibble", "data.frame",
  "list", "json"))

Arguments

con	list, brapi connection object
germplasmPUI	character, search for germplasm information using a Permanent Unique Identifier (DOI, URI, etc.); default: ""
germplasmDbId	character, search for germplasm information using an internal germplasm database identifier; default: ""
germplasmName	character, search for germplasm information using the name of the germplasm; default: ""
commonCropName	character, search for germplasm information using the common crop name related to the germplasm; default: ""
pageSize	integer, items per page to be returned; default: 1000
page	integer, the requested page to be returned; default: 0 (1st page)
rclass	character, class of the object to be returned; default: "tibble" , possible other values: "data.frame"/"list"/"json"

Value

An object of class as defined by rclass containing the germaplasm information result of the search.

Note

Tested against: test-server, BMS

BrAPI Version: 1.0, 1.1, 1.2

BrAPI Status: active

Author(s)

Reinhard Simon, Maikel Verouden

References

github

See Also

Other brapicore: ba_calls, ba_commoncropnames, ba_crops, ba_germplasm_details_study, ba_germplasm_details, ba_germplasm_pedigree, ba_germplasm_progeny, ba_germplasm_search_post, ba_observationvariables_datatypes, ba_observationvariables_details, ba_observationvariables_ontologies, ba_observationvariables, ba_phenotypes_search_post, ba_programs_search_post, ba_programs, ba_studies_germplasm_details, ba_traits_details, ba_traits

Other genotyping: ba_genomemaps_data_range, ba_genomemaps_data, ba_genomemaps_details, ba_genomemaps, ba_germplasm_attributes, ba_germplasm_markerprofiles, ba_germplasm_search_post, ba_germplasmattributes_attributes, ba_germplasmattributes_categories, ba_germplasmattributes_details, ba_markerprofiles_allelematrices_details, ba_markerprofiles_allelematrices_search_post, ba_markerprofiles_allelematrices_search, ba_markerprofiles_allelematrix_search, ba_markerprofiles_details, ba_markerprofiles_search, ba_markers_details, ba_markers_search_post, ba_markers_search

Other germplasm: ba_germplasm_breedingmethods, ba_germplasm_details_study, ba_germplasm_details, ba_germplasm_markerprofiles, ba_germplasm_pedigree, ba_germplasm_progeny, ba_germplasm_search_post, ba_studies_germplasm_details

Examples

if (interactive()) {
  library(brapi)

  con <- ba_db()$testserver

  ba_germplasm_search(con, germplasmDbId = "1")


}

c5sire/brapi documentation built on Oct. 17, 2019, 11:45 a.m.