ba_germplasm_search_post: ba_germplasm_search_post

In c5sire/brapi: Client to Access Breeding Databases Using BrAPI

Description

Retrieve germplasm information as result of a POST search.

Usage

ba_germplasm_search_post(con = NULL, germplasmPUIs = "",
  germplasmDbIds = "", germplasmSpecies = "", germplasmGenus = "",
  germplasmNames = "", accessionNumbers = "", commonCropName = "",
  pageSize = 1000, page = 0, rclass = c("tibble", "data.frame",
  "list", "json"))

Arguments

con	brapi connection object
germplasmPUIs	character vector, search for germplasm information using multiple Permanent Unique Identifiers (DOI, URI, etc.) e.g. c("http://www.crop-diversity.org/mgis/accession/01BEL084609", "doi:10.15454/328757862534E12"); default: ""
germplasmDbIds	character vector, search for germplasm information using internal germplasm database identifiers e.g. c("986", "01BEL084609"); default: ""
germplasmSpecies	character vector, search for germplasm information using species names e.g. c("aestivum", "vinifera"); default: ""
germplasmGenus	character vector, search for germplasm information using genus names e.g. c("Solanum", "Triticum"); default: ""
germplasmNames	character vector, search for germplasm information using the names of germplasm e.g. c("XYZ1", "Pahang"); default: ""
accessionNumbers	character vector, search for germplasm information using accession numbers e.g. c("ITC0609", "ITC0685"); default: ""
commonCropName	character, search for germplasm information using the common crop name related to the germplasm e.g. "wheat"; default: ""
pageSize	integer, items per page to be returned; default: 1000
page	integer, the requested page to be returned; default: 0 (1st page)
rclass	character, class of the object to be returned; default: "tibble" , possible other values: "data.frame"/"list"/"json"

Value

An object of class as defined by rclass containing the germplasm information fulfilling the search criteria.

Note

Tested against: test-server

BrAPI Version: 1,0. 1.1, 1.2

BrAPI Status: active

Author(s)

Reinhard Simon, Maikel Verouden

References

github

See Also

Other brapicore: ba_calls, ba_commoncropnames, ba_crops, ba_germplasm_details_study, ba_germplasm_details, ba_germplasm_pedigree, ba_germplasm_progeny, ba_germplasm_search, ba_observationvariables_datatypes, ba_observationvariables_details, ba_observationvariables_ontologies, ba_observationvariables, ba_phenotypes_search_post, ba_programs_search_post, ba_programs, ba_studies_germplasm_details, ba_traits_details, ba_traits

Other genotyping: ba_genomemaps_data_range, ba_genomemaps_data, ba_genomemaps_details, ba_genomemaps, ba_germplasm_attributes, ba_germplasm_markerprofiles, ba_germplasm_search, ba_germplasmattributes_attributes, ba_germplasmattributes_categories, ba_germplasmattributes_details, ba_markerprofiles_allelematrices_details, ba_markerprofiles_allelematrices_search_post, ba_markerprofiles_allelematrices_search, ba_markerprofiles_allelematrix_search, ba_markerprofiles_details, ba_markerprofiles_search, ba_markers_details, ba_markers_search_post, ba_markers_search

Other germplasm: ba_germplasm_breedingmethods, ba_germplasm_details_study, ba_germplasm_details, ba_germplasm_markerprofiles, ba_germplasm_pedigree, ba_germplasm_progeny, ba_germplasm_search, ba_studies_germplasm_details

Examples

if (interactive()) {
  library(brapi)

  con <- ba_db()$testserver

  ba_germplasm_search_post(con, germplasmDbIds = c("1", "2"))


}

c5sire/brapi documentation built on Oct. 17, 2019, 11:45 a.m.