Description Usage Arguments Value Note Author(s) References See Also Examples
View source: R/ba_markers_search.R
Search for markers on a brapi server via a GET method.
1 2 3 4 |
con |
list, brapi connection object |
markerDbIds |
character vector, search for specific markers by internal database identifiers, supplied as a comma separated character vector of internal marker database identifiers e.g. c("1185","1186"); default: "" |
name |
character, search for markers by a search pattern of a marker name or synonym e.g. "11_1002", "11_1 default: "" |
matchMethod |
character, search for markers using a match method with as possible values "case_insensitive", "exact" (which is case sensitive), and "wildcard" (which is case insensitive and uses both "*" and " for one character matching); default: "", which results in "exact" |
includeSynonyms |
logical, search for markers including synonyms, specified as TRUE, or without, specified as FALSE; default: NA, possible other values: TRUE/FALSE |
type |
character, search for a specific type of marker, e.g. "SNP"; default: "" |
pageSize |
integer, items per page to be returned; default: 1000 |
page |
integer, the requested page to be returned; default: 0 (1st page) |
rclass |
character, class of the object to be returned; default: "tibble" , possible other values: "json"/"list"/"vector"/"data.frame" |
An object of class as defined by rclass containing the markers fulfilling the search criteria.
Tested against: test-server
BrAPI Version: 1.1, 1.2
BrAPI Status: active
Reinhard Simon, Maikel Verouden
Other markers: ba_markers_details
,
ba_markers_search_post
Other genotyping: ba_genomemaps_data_range
,
ba_genomemaps_data
,
ba_genomemaps_details
,
ba_genomemaps
,
ba_germplasm_attributes
,
ba_germplasm_markerprofiles
,
ba_germplasm_search_post
,
ba_germplasm_search
,
ba_germplasmattributes_attributes
,
ba_germplasmattributes_categories
,
ba_germplasmattributes_details
,
ba_markerprofiles_allelematrices_details
,
ba_markerprofiles_allelematrices_search_post
,
ba_markerprofiles_allelematrices_search
,
ba_markerprofiles_allelematrix_search
,
ba_markerprofiles_details
,
ba_markerprofiles_search
,
ba_markers_details
,
ba_markers_search_post
1 2 3 4 5 6 7 | if (interactive()) {
library(brapi)
con <- ba_db()$testserver
ba_markers_search(con)
}
|
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