Files in caggtaagtat/ModCon

Modifying splice site usage by changing the mRNP code, while maintaining the genetic code

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DESCRIPTION

LICENSE

NAMESPACE

NEWS

R/ModCon.R R/calculateHZEIint.R R/calculateMaxEntScanScore.R R/changeSequenceHZEI.R R/createCodonMatrix.R R/createFilialSequencePopulation.R R/decreaseGTsiteStrength.R R/degradeSAs.R R/degradeSDs.R R/generateRandomCodonsPerAA.R R/getOverlappingVectorsFromVector.R R/increaseGTsiteStrength.R R/mutatePopulation.R R/recombineTwoSequences.R R/selectBestAndMean.R R/selectMatingIndividuals.R R/slidingWindowHZEImanipulation.R R/startModConApp.R

R/sysdata.rda

README.md

data/Codons.rda

data/cds.rda

data/hbg.rda

data/hex.rda

inst/extdata/me2x5

inst/extdata/referenceDnaStringSet.fa

inst/extdata/score3.pl

inst/extdata/score5.pl

inst/extdata/splicemodels/hashseq.m

inst/extdata/splicemodels/me1s0acc1

inst/extdata/splicemodels/me1s0acc2

inst/extdata/splicemodels/me1s0acc3

inst/extdata/splicemodels/me1s0acc4

inst/extdata/splicemodels/me1s0acc5

inst/extdata/splicemodels/me1s0acc6

inst/extdata/splicemodels/me1s0acc7

inst/extdata/splicemodels/me1s0acc8

inst/extdata/splicemodels/me1s0acc9

inst/extdata/splicemodels/me2s0

inst/extdata/splicemodels/me2s0acc1

inst/extdata/splicemodels/me2s0acc2

inst/extdata/splicemodels/me2s0acc3

inst/extdata/splicemodels/me2s0acc4

inst/extdata/splicemodels/me2s0acc5

inst/extdata/splicemodels/me2s0acc6

inst/extdata/splicemodels/me2s0acc7

inst/extdata/splicemodels/me2s0acc8

inst/extdata/splicemodels/me2s0acc9

inst/extdata/splicemodels/me2x3acc1

inst/extdata/splicemodels/me2x3acc2

inst/extdata/splicemodels/me2x3acc3

inst/extdata/splicemodels/me2x3acc4

inst/extdata/splicemodels/me2x3acc5

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inst/extdata/splicemodels/me2x3acc8

inst/extdata/splicemodels/me2x3acc9

inst/extdata/splicemodels/me2x5

inst/extdata/splicemodels/splice5sequences

inst/extdata/test3

inst/extdata/test5

inst/shinyApp/app.R man/Codons.Rd man/ModCon.Rd man/calculateHZEIint.Rd man/calculateMaxEntScanScore.Rd man/cds.Rd man/changeSequenceHZEI.Rd man/createCodonMatrix.Rd man/createFilialSequencePopulation.Rd man/decreaseGTsiteStrength.Rd man/degradeSAs.Rd man/degradeSDs.Rd man/generateRandomCodonsPerAA.Rd man/getOverlappingVectorsFromVector.Rd man/hbg.Rd man/hex.Rd man/increaseGTsiteStrength.Rd man/mutatePopulation.Rd man/recombineTwoSequences.Rd man/selectBestAndMean.Rd man/selectMatingIndividuals.Rd man/slidingWindowHZEImanipulation.Rd man/startModConApp.Rd tests/testthat.R tests/testthat/test-ModCon.R tests/testthat/test-calculateHZEIint.R tests/testthat/test-calculateMaxEntScanScore.R tests/testthat/test-changeSequenceHZEI.R tests/testthat/test-createCodonMatrix.R tests/testthat/test-createFilialSequencePopulation.R tests/testthat/test-decreaseGTsiteStrength.R tests/testthat/test-degradeSAs.R tests/testthat/test-degradeSDs.R tests/testthat/test-generateRandomCodonsPerAA.R tests/testthat/test-increaseGTsiteStrength.R tests/testthat/test-slidingWindowHZEImanipulation.R vignettes/ModCon.Rmd

caggtaagtat/ModCon documentation built on March 12, 2021, 4:12 a.m.