recombineTwoSequences: Generate new sequence from recombination of two sequences

In caggtaagtat/ModCon: Modifying splice site usage by changing the mRNP code, while maintaining the genetic code

Description

This function generates a new sequences through recombination of two parental sequences using 3 modi of recombination. Either random combination of codons, crossover recombination or insertion.

Usage

recombineTwoSequences(ntSequence1, ntSequence2, preferenceVector)

Arguments

ntSequence1	Character value of a nucleotide sequence
ntSequence2	Character value of a nucleotide sequence
preferenceVector	Numeric vector of length three which indicates which modus of recombination should be prefered. The first number states the chance of random recombination, the second number indicates the chance of cross-over recombination and the third number indicates the chance of insertion recombination.

Value

Character value of a nucleotide sequence, generated by recombination from the entered ntSequence1 and ntSequence2. Modes of recombination are cross-over, insertion and random and mode preferences can be stated by preferenceVector.

Examples

recombineTwoSequences("AGGGCCTGGAGGAGGCTT","TAAGGCAAGCCTGGACCC",c(1,3,2))

caggtaagtat/ModCon documentation built on March 12, 2021, 4:12 a.m.