mutatePopulation: Randomly exchange codons within a set of sequences.

In caggtaagtat/ModCon: Modifying splice site usage by changing the mRNP code, while maintaining the genetic code

Description

For every codon within a set of nucleotide sequences randomly exchange the codon encoding the same amino acid to a certain chance.

Usage

mutatePopulation(sequenceVector, codonReplacementChance)

Arguments

sequenceVector	Character vector of nucleotide sequences (at least 3 nt long)
codonReplacementChance	Numeric value of chance of a codons within the sequences to get exchanged to another codon encoding the same amino acid

Value

Creates a character vector of coding nucleotide sequences encoding the same amino acid sequence as the entered sequenceVector. By a mutation rate stated in codonReplacementChance, codons are randomly exchanged, by alternative codons encoding the same amino acid.

Examples

mutatePopulation(c("CGCGATACGCTAAGCGCTACCGATAGTGGA","TGGGATATTTTAAGCGCTGACGATAGTGGA"), 0.1)

caggtaagtat/ModCon documentation built on March 12, 2021, 4:12 a.m.