Man pages for caggtaagtat/VarCon
VarCon
| calculateHZEIperNT | Generates table with HZEI scores per nucleotide of a... |
| calculateMaxEntScanScore | Calculate MaxEntScan score of a splice site sequence |
| gene2transcript | Small data frame specifying a transcript to certain genes for... |
| generateHEXplorerPlot | Generates plot with HZEI values and splice site strengths... |
| getMaxEntInfo | Generates table with MaxEntScan scores per potential SA... |
| getSeqInfoFromVariation | Collects information about genomic context of sequence... |
| hbg | Donor sequences and their HBS |
| hex | Hexamers and Z scores |
| prepareReferenceFasta | Imports Fasta file from filepath. |
| referenceDnaStringSet | Small DNAStringset as exemplary reference genome sequence |
| startVarConApp | Start GUI of VarCon. |
| transCoord | Small table as exemplary transcript table with exon... |
