Man pages for caggtaagtat/VarCon
VarCon

calculate_HEX_per_ntGenerates table with HZEI scores per nucleotide of a...
calculate_maxentCalculate MaxEntScan score of a splice site sequence
gene2transcriptSmall data frame specifying a transcript to certain genes for...
get_HEXplorer_plotGenerates table with MaxEntScan scores per potential SA...
Get_maxent_infoGenerates table with MaxEntScan scores per potential SA...
get_seq_info_from_variationCollects information about genomic context of sequence...
hbgDonor sequences and their HBS
hexHexamers and Z scores
prepare_reference_fastaImports Fasta file from filepath.
setSmall DNAStringset as exemplary reference genome sequence
trans_cordSmall table as exemplary transcript table with exon...
trans_cord_GRCh37Small table as exemplary transcript table with exon...
trans_cord_GRCh38Small table as exemplary transcript table with exon...
caggtaagtat/VarCon documentation built on July 23, 2020, 12:34 a.m.