generateHEXplorerPlot: Generates plot with HZEI values and splice site strengths...
In caggtaagtat/VarCon: VarCon

Description Usage Arguments Value Examples

This function generates a plot depicting the HZEI score changes and changes in the HBS or MaxEntScan score, from a sequence variation.

1	generateHEXplorerPlot(variationInfoList, ntWindow)

`variationInfoList`	Output from the `getSeqInfoFromVariation` function.
`ntWindow`	Numeric value defining the sequence surrounding of interest.

Plot stating the HZEI values per nt and splice site strength with and without the SNV.

#Defining exemplary input data
transcriptTable <- transCoord    # Using pseudo transcript table
transcriptID <- "pseudo_ENST00000650636"     # Using pseudo transcript 
variation <- "c.412C>G/p.(T89M)"
ntWindow <- 20
gene2transcript <- data.frame(gene_name = "Example_gene", 
gene_ID = "pseudo_ENSG00000147099", transcript_ID = "pseudo_ENST00000650636")

results <- getSeqInfoFromVariation(referenceDnaStringSet, transcriptID, variation, ntWindow=ntWindow, transcriptTable, gene2transcript)

generateHEXplorerPlot(results)