transCoord: Small table as exemplary transcript table with exon...

In caggtaagtat/VarCon: VarCon

Description

Small table as exemplary transcript table with exon coordinates.

Usage

transCoord

Format

data frame

Gene.stable.ID

Ensembl gene ID

Transcript.stable.ID

Ensembl Transcript ID

Strand

Strand of the feature

Exon.region.start..bp.

Smalles coordinate of the exon end coordinates of a specific exon

Exon.region.end..bp.

Largest coordinate of the exon end coordinates of a specific exon

cDNA.coding.start

Start of the coding sequence

cDNA.coding.end

End of the coding sequence

CDS.start

Covered coding nucleotides start

CDS.end

Covered coding nucleotides end

Exon.rank.in.transcript

Rank of the exon within the respective transcript

Exon.stable.ID

Ensembl exon ID

Chromosome.scaffold.name

Name of the chromosome

Examples

 transCoord

caggtaagtat/VarCon documentation built on Nov. 26, 2020, 7:03 a.m.