prepareReferenceFasta: Imports Fasta file from filepath.
In caggtaagtat/VarCon: VarCon
Description
Usage
Arguments
Value
Examples
View source: R/prepareReferenceFasta.R
Description
This function imports Fasta file of the reference genome into R enviroment as DNAStringset.
Usage
1
prepareReferenceFasta(filepath)
Arguments
filepath
R conform filepath to the fasta file of the reference genome to use.
Value
Creates new DNAStringSet from the object stated by the entered filepath.
Examples
1
2
3
## Loading exemplary DNAStringSet
filepath <- system.file("extdata", "fastaEx.fa", package="Biostrings")
referenceDnaStringSet <- prepareReferenceFasta(filepath)
caggtaagtat/VarCon documentation built on Nov. 26, 2020, 7:03 a.m.
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Description Usage Arguments Value Examples
View source: R/prepareReferenceFasta.R
Description
This function imports Fasta file of the reference genome into R enviroment as DNAStringset.
Usage
1 | prepareReferenceFasta(filepath)
|
Arguments
filepath |
R conform filepath to the fasta file of the reference genome to use. |
Value
Creates new DNAStringSet from the object stated by the entered filepath.
Examples
1 2 3 | ## Loading exemplary DNAStringSet
filepath <- system.file("extdata", "fastaEx.fa", package="Biostrings")
referenceDnaStringSet <- prepareReferenceFasta(filepath)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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