threshold_filter: Filter data frames with custom predicates

In calabrialab/ISAnalytics: Analyze gene therapy vector insertion sites data identified from genomics next generation sequencing reads for clonal tracking studies

Filter data frames with custom predicates

Description

This function is deprecated and it's likely going to be dropped in the next release cycle.

Filter a single data frame or a list of data frames with custom predicates assembled from the function parameters.

Usage

threshold_filter(x, threshold, cols_to_compare = "Value", comparators = ">")

Arguments

x	A data frame or a list of data frames
threshold	A numeric/integer vector or a named list of numeric/integer vectors
cols_to_compare	A character vector or a named list of character vectors
comparators	A character vector or a named list of character vectors. Must be one of the allowed values between c("<", ">", "==", "!=", ">=", "<=")

Value

A data frame or a list of data frames

See Also

Other Data cleaning and pre-processing: aggregate_metadata(), aggregate_values_by_key(), compute_near_integrations(), default_meta_agg(), outlier_filter(), outliers_by_pool_fragments(), purity_filter(), realign_after_collisions(), remove_collisions()

Examples

## Not run: 
example_df <- tibble::tibble(
    a = c(20, 30, 40),
    b = c(40, 50, 60),
    c = c("a", "b", "c"),
    d = c(3L, 4L, 5L)
)
example_list <- list(
    first = example_df,
    second = example_df,
    third = example_df
)

filtered <- threshold_filter(example_list,
    threshold = list(
        first = c(20, 60),
        third = c(25)
    ),
    cols_to_compare = list(
        first = c("a", "b"),
        third = c("a")
    ),
    comparators = list(
        first = c(">", "<"),
        third = c(">=")
    )
)
filtered

## End(Not run)

calabrialab/ISAnalytics documentation built on Nov. 2, 2023, 8:57 p.m.