R/ISAnalytics-deprecated.R

In calabrialab/ISAnalytics: Analyze gene therapy vector insertion sites data identified from genomics next generation sequencing reads for clonal tracking studies

#' @title Deprecated functions in package \pkg{ISAnalytics}.
#' @description These functions are provided for compatibility
#'  with older versions of \sQuote{ISAnalytics} only,
#'  and will be defunct at the next release.
#' @name ISAnalytics-deprecated
#' @details The following functions are deprecated and will be made defunct;
#' use the replacement indicated below:
#'
#' * import_parallel_Vispa2Matrices_auto (defunct):
#'  \code{\link{import_parallel_Vispa2Matrices}}
#'  * import_parallel_Vispa2Matrices_interactive (defunct):
#'  \code{\link{import_parallel_Vispa2Matrices}}
#'  * unzip_file_system:
#'  \code{\link{generate_default_folder_structure}}
#'  * cumulative_count_union (defunct):
#'  \code{\link{cumulative_is}}
#'  * threshold_filter
#' @keywords internal
NULL