recodeClusterY: Recode feature module labels

In campbio/celda: CEllular Latent Dirichlet Allocation

Recode feature module labels

Description

Recode feature module clusters using a mapping in the from and to arguments.

Usage

recodeClusterY(sce, from, to, altExpName = "featureSubset")

Arguments

sce	SingleCellExperiment object returned from celda_G or celda_CG. Must contain column celda_feature_module in rowData(altExp(sce, altExpName)).
from	Numeric vector. Unique values in the range of seq(celdaModules(sce)) that correspond to the original module labels in sce.
to	Numeric vector. Unique values in the range of seq(celdaModules(sce)) that correspond to the new module labels.
altExpName	The name for the altExp slot to use. Default "featureSubset".

Value

@return SingleCellExperiment object with recoded feature module labels.

Examples

data(sceCeldaCG)
sceReorderedY <- recodeClusterY(sceCeldaCG, c(1, 3), c(3, 1))

campbio/celda documentation built on April 5, 2024, 11:47 a.m.