sampleLabel: Get or set sample labels from a celda SingleCellExperiment...

In campbio/celda: CEllular Latent Dirichlet Allocation

Get or set sample labels from a celda SingleCellExperiment object

Description

Return or set the sample labels for the cells in sce.

Usage

sampleLabel(x, altExpName = "featureSubset")

## S4 method for signature 'SingleCellExperiment'
sampleLabel(x, altExpName = "featureSubset")

sampleLabel(x, altExpName = "featureSubset") <- value

## S4 replacement method for signature 'SingleCellExperiment'
sampleLabel(x, altExpName = "featureSubset") <- value

## S4 method for signature 'celdaModel'
sampleLabel(x)

Arguments

x	Can be one of A SingleCellExperiment object returned by celda_C, celda_G, or celda_CG, with the matrix located in the useAssay assay slot. Rows represent features and columns represent cells. A celda model object.
altExpName	The name for the altExp slot to use. Default "featureSubset".
value	Character vector of sample labels for replacements. Works only is x is a SingleCellExperiment object.

Value

Character vector. Contains the sample labels provided at model creation, or those automatically generated by celda.

Examples

data(sceCeldaCG)
sampleLabel(sceCeldaCG)
data(celdaCGMod)
sampleLabel(celdaCGMod)

campbio/celda documentation built on April 5, 2024, 11:47 a.m.