sceCeldaCGGridSearch: sceCeldaCGGridSearch
In campbio/celda: CEllular Latent Dirichlet Allocation

sceCeldaCGGridSearch

R Documentation

sceCeldaCGGridSearch

Description

A SingleCellExperiment object containing the results of running selectFeatures and celdaGridSearch on celdaCGSim.

Usage

sceCeldaCGGridSearch

Format

A SingleCellExperiment object

Examples

data(celdaCGSim)
sce <- selectFeatures(celdaCGSim$counts)
sceCeldaCGGridSearch <- celdaGridSearch(sce,
    model = "celda_CG",
    paramsTest = list(K = seq(4, 6), L = seq(9, 11)),
    paramsFixed = list(sampleLabel = celdaCGSim$sampleLabel),
    bestOnly = TRUE,
    nchains = 1,
    cores = 1,
    verbose = FALSE)

campbio/celda documentation built on April 5, 2024, 11:47 a.m.