tests/testthat/_snaps/file_helper.md

In cancerit/RCRISPR: R Functions for CRISPR-Related Analyses

read uncompressed sample count to dataframe

Code
  read_file_to_dataframe(filepath = system.file("testdata", "test_counts.tsv",
    package = "rcrispr"), file_separator = "\t", file_header = TRUE)
Output
                        sgRNA GENE HELA_T0
  1 A1BG_CACCTTCGAGCTGCTGCGCG A1BG     478
  2 A1BG_AAGAGCGCCTCGGTCCCAGC A1BG       0
  3 A1BG_TGGACTTCCAGCTACGGCGC A1BG     274

read gzipped sample count to dataframe

Code
  read_file_to_dataframe(filepath = system.file("testdata", "test_counts.tsv.gz",
    package = "rcrispr"), file_separator = "\t", file_header = TRUE)
Output
                        sgRNA GENE HELA_T15A_CTRL
  1 A1BG_CACCTTCGAGCTGCTGCGCG A1BG            519
  2 A1BG_AAGAGCGCCTCGGTCCCAGC A1BG              0
  3 A1BG_TGGACTTCCAGCTACGGCGC A1BG            193

read uncompressed sample count to dataframe with column indices

Code
  read_file_to_dataframe(filepath = system.file("testdata", "test_counts.tsv",
    package = "rcrispr"), file_separator = "\t", file_header = TRUE,
  column_indices = 3)
Output
    HELA_T0
  1     478
  2       0
  3     274

cancerit/RCRISPR documentation built on April 26, 2023, 10:12 p.m.