tests/testthat/_snaps/raw_count_plots.md
In cancerit/RCRISPR: R Functions for CRISPR-Related Analyses
can plot mapping statistics, all samples
Code
p$data
Output
sample category num_reads pct
1 HELA_T0 mapped 752 71.62
2 HELA_T15A_CTRL mapped 712 36.81
3 HELA_T15B_CTRL mapped 602 30.18
4 HELA_T15C_CTRL mapped 800 47.82
5 HELA_T15A_OLA mapped 469 30.10
6 HELA_T15B_OLA mapped 1000 74.74
7 HELA_T15C_OLA mapped 319 31.21
8 HELA_T0 unmapped 298 28.38
9 HELA_T15A_CTRL unmapped 1222 63.19
10 HELA_T15B_CTRL unmapped 1393 69.82
11 HELA_T15C_CTRL unmapped 873 52.18
12 HELA_T15A_OLA unmapped 1089 69.90
13 HELA_T15B_OLA unmapped 338 25.26
14 HELA_T15C_OLA unmapped 703 68.79
Code
p$layers
Output
[[1]]
mapping: fill = ~category
geom_col: just = 0.5, width = NULL, na.rm = FALSE
stat_identity: na.rm = FALSE
position_stack
can plot mapping statistics, one sample
Code
p$data
Output
sample category num_reads pct
1 HELA_T0 mapped 752 71.62
2 HELA_T0 unmapped 298 28.38
Code
p$layers
Output
[[1]]
mapping: fill = ~category
geom_col: just = 0.5, width = NULL, na.rm = FALSE
stat_identity: na.rm = FALSE
position_stack
can plot common barplot, one sample
Code
p$data
Output
sample total_reads prop_mapped_reads pct_mapped_reads total_counts
1 HELA_T0 1050 0.71619 71.62 752
total_sgrnas zero_sgrnas pct_zero_sgrnas low_sgrnas pct_low_sgrnas gini_index
1 3 1 33.33 1 33.33 0.52
Code
p$layers
Output
[[1]]
geom_col: just = 0.5, width = NULL, na.rm = FALSE
stat_identity: na.rm = FALSE
position_stack
can plot common barplot, multiple samples
Code
p$data
Output
sample total_reads prop_mapped_reads pct_mapped_reads total_counts
1 HELA_T0 1050 0.71619 71.62 752
2 HELA_T15A_CTRL 1934 0.36815 36.81 712
3 HELA_T15B_CTRL 1995 0.30175 30.18 602
4 HELA_T15C_CTRL 1673 0.47818 47.82 800
5 HELA_T15A_OLA 1558 0.30103 30.10 469
6 HELA_T15B_OLA 1338 0.74738 74.74 1000
7 HELA_T15C_OLA 1022 0.31213 31.21 319
total_sgrnas zero_sgrnas pct_zero_sgrnas low_sgrnas pct_low_sgrnas gini_index
1 3 1 33.33 1 33.33 0.52
2 3 1 33.33 1 33.33 0.54
3 3 1 33.33 1 33.33 0.54
4 3 0 0.00 0 0.00 0.16
5 3 1 33.33 1 33.33 0.58
6 3 0 0.00 1 33.33 0.23
7 3 1 33.33 1 33.33 0.59
Code
p$layers
Output
[[1]]
geom_col: just = 0.5, width = NULL, na.rm = FALSE
stat_identity: na.rm = FALSE
position_stack
can plot common barplot, with xlab and ylab
Code
p$data
Output
sample total_reads prop_mapped_reads pct_mapped_reads total_counts
1 HELA_T0 1050 0.71619 71.62 752
2 HELA_T15A_CTRL 1934 0.36815 36.81 712
3 HELA_T15B_CTRL 1995 0.30175 30.18 602
4 HELA_T15C_CTRL 1673 0.47818 47.82 800
5 HELA_T15A_OLA 1558 0.30103 30.10 469
6 HELA_T15B_OLA 1338 0.74738 74.74 1000
7 HELA_T15C_OLA 1022 0.31213 31.21 319
total_sgrnas zero_sgrnas pct_zero_sgrnas low_sgrnas pct_low_sgrnas gini_index
1 3 1 33.33 1 33.33 0.52
2 3 1 33.33 1 33.33 0.54
3 3 1 33.33 1 33.33 0.54
4 3 0 0.00 0 0.00 0.16
5 3 1 33.33 1 33.33 0.58
6 3 0 0.00 1 33.33 0.23
7 3 1 33.33 1 33.33 0.59
Code
p$layers
Output
[[1]]
geom_col: just = 0.5, width = NULL, na.rm = FALSE
stat_identity: na.rm = FALSE
position_stack
can plot common barplot, with groups
Code
p$data
Output
sample total_reads prop_mapped_reads pct_mapped_reads total_counts
1 HELA_T0 1050 0.71619 71.62 752
2 HELA_T15A_CTRL 1934 0.36815 36.81 712
3 HELA_T15B_CTRL 1995 0.30175 30.18 602
4 HELA_T15C_CTRL 1673 0.47818 47.82 800
5 HELA_T15A_OLA 1558 0.30103 30.10 469
6 HELA_T15B_OLA 1338 0.74738 74.74 1000
7 HELA_T15C_OLA 1022 0.31213 31.21 319
total_sgrnas zero_sgrnas pct_zero_sgrnas low_sgrnas pct_low_sgrnas gini_index
1 3 1 33.33 1 33.33 0.52
2 3 1 33.33 1 33.33 0.54
3 3 1 33.33 1 33.33 0.54
4 3 0 0.00 0 0.00 0.16
5 3 1 33.33 1 33.33 0.58
6 3 0 0.00 1 33.33 0.23
7 3 1 33.33 1 33.33 0.59
group
1 HELA_T0
2 HELA_T15A_CTRL
3 HELA_T15B_CTRL
4 HELA_T15C_CTRL
5 HELA_T15A_OLA
6 HELA_T15B_OLA
7 HELA_T15C_OLA
Code
p$layers
Output
[[1]]
geom_col: just = 0.5, width = NULL, na.rm = FALSE
stat_identity: na.rm = FALSE
position_stack
cancerit/RCRISPR documentation built on April 26, 2023, 10:12 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
can plot mapping statistics, all samples
Code
p$data
Output
sample category num_reads pct
1 HELA_T0 mapped 752 71.62
2 HELA_T15A_CTRL mapped 712 36.81
3 HELA_T15B_CTRL mapped 602 30.18
4 HELA_T15C_CTRL mapped 800 47.82
5 HELA_T15A_OLA mapped 469 30.10
6 HELA_T15B_OLA mapped 1000 74.74
7 HELA_T15C_OLA mapped 319 31.21
8 HELA_T0 unmapped 298 28.38
9 HELA_T15A_CTRL unmapped 1222 63.19
10 HELA_T15B_CTRL unmapped 1393 69.82
11 HELA_T15C_CTRL unmapped 873 52.18
12 HELA_T15A_OLA unmapped 1089 69.90
13 HELA_T15B_OLA unmapped 338 25.26
14 HELA_T15C_OLA unmapped 703 68.79
Code
p$layers
Output
[[1]]
mapping: fill = ~category
geom_col: just = 0.5, width = NULL, na.rm = FALSE
stat_identity: na.rm = FALSE
position_stack
can plot mapping statistics, one sample
Code
p$data
Output
sample category num_reads pct
1 HELA_T0 mapped 752 71.62
2 HELA_T0 unmapped 298 28.38
Code
p$layers
Output
[[1]]
mapping: fill = ~category
geom_col: just = 0.5, width = NULL, na.rm = FALSE
stat_identity: na.rm = FALSE
position_stack
can plot common barplot, one sample
Code
p$data
Output
sample total_reads prop_mapped_reads pct_mapped_reads total_counts
1 HELA_T0 1050 0.71619 71.62 752
total_sgrnas zero_sgrnas pct_zero_sgrnas low_sgrnas pct_low_sgrnas gini_index
1 3 1 33.33 1 33.33 0.52
Code
p$layers
Output
[[1]]
geom_col: just = 0.5, width = NULL, na.rm = FALSE
stat_identity: na.rm = FALSE
position_stack
can plot common barplot, multiple samples
Code
p$data
Output
sample total_reads prop_mapped_reads pct_mapped_reads total_counts
1 HELA_T0 1050 0.71619 71.62 752
2 HELA_T15A_CTRL 1934 0.36815 36.81 712
3 HELA_T15B_CTRL 1995 0.30175 30.18 602
4 HELA_T15C_CTRL 1673 0.47818 47.82 800
5 HELA_T15A_OLA 1558 0.30103 30.10 469
6 HELA_T15B_OLA 1338 0.74738 74.74 1000
7 HELA_T15C_OLA 1022 0.31213 31.21 319
total_sgrnas zero_sgrnas pct_zero_sgrnas low_sgrnas pct_low_sgrnas gini_index
1 3 1 33.33 1 33.33 0.52
2 3 1 33.33 1 33.33 0.54
3 3 1 33.33 1 33.33 0.54
4 3 0 0.00 0 0.00 0.16
5 3 1 33.33 1 33.33 0.58
6 3 0 0.00 1 33.33 0.23
7 3 1 33.33 1 33.33 0.59
Code
p$layers
Output
[[1]]
geom_col: just = 0.5, width = NULL, na.rm = FALSE
stat_identity: na.rm = FALSE
position_stack
can plot common barplot, with xlab and ylab
Code
p$data
Output
sample total_reads prop_mapped_reads pct_mapped_reads total_counts
1 HELA_T0 1050 0.71619 71.62 752
2 HELA_T15A_CTRL 1934 0.36815 36.81 712
3 HELA_T15B_CTRL 1995 0.30175 30.18 602
4 HELA_T15C_CTRL 1673 0.47818 47.82 800
5 HELA_T15A_OLA 1558 0.30103 30.10 469
6 HELA_T15B_OLA 1338 0.74738 74.74 1000
7 HELA_T15C_OLA 1022 0.31213 31.21 319
total_sgrnas zero_sgrnas pct_zero_sgrnas low_sgrnas pct_low_sgrnas gini_index
1 3 1 33.33 1 33.33 0.52
2 3 1 33.33 1 33.33 0.54
3 3 1 33.33 1 33.33 0.54
4 3 0 0.00 0 0.00 0.16
5 3 1 33.33 1 33.33 0.58
6 3 0 0.00 1 33.33 0.23
7 3 1 33.33 1 33.33 0.59
Code
p$layers
Output
[[1]]
geom_col: just = 0.5, width = NULL, na.rm = FALSE
stat_identity: na.rm = FALSE
position_stack
can plot common barplot, with groups
Code
p$data
Output
sample total_reads prop_mapped_reads pct_mapped_reads total_counts
1 HELA_T0 1050 0.71619 71.62 752
2 HELA_T15A_CTRL 1934 0.36815 36.81 712
3 HELA_T15B_CTRL 1995 0.30175 30.18 602
4 HELA_T15C_CTRL 1673 0.47818 47.82 800
5 HELA_T15A_OLA 1558 0.30103 30.10 469
6 HELA_T15B_OLA 1338 0.74738 74.74 1000
7 HELA_T15C_OLA 1022 0.31213 31.21 319
total_sgrnas zero_sgrnas pct_zero_sgrnas low_sgrnas pct_low_sgrnas gini_index
1 3 1 33.33 1 33.33 0.52
2 3 1 33.33 1 33.33 0.54
3 3 1 33.33 1 33.33 0.54
4 3 0 0.00 0 0.00 0.16
5 3 1 33.33 1 33.33 0.58
6 3 0 0.00 1 33.33 0.23
7 3 1 33.33 1 33.33 0.59
group
1 HELA_T0
2 HELA_T15A_CTRL
3 HELA_T15B_CTRL
4 HELA_T15C_CTRL
5 HELA_T15A_OLA
6 HELA_T15B_OLA
7 HELA_T15C_OLA
Code
p$layers
Output
[[1]]
geom_col: just = 0.5, width = NULL, na.rm = FALSE
stat_identity: na.rm = FALSE
position_stack
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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