low_counts_per_sample: Low counts per sample

In cancerit/RCRISPR: R Functions for CRISPR-Related Analyses

Low counts per sample

Description

Calculate number of low count guides per sample.

Usage

low_counts_per_sample(
  count_matrix = NULL,
  id_column = 1,
  gene_column = 2,
  count_column = 3,
  filter_label = "zero_sgrnas",
  threshold = 1
)

Arguments

count_matrix	a count matrix data frame.
id_column	the index of column containing unique sgRNA identifiers.
gene_column	the index of column containing gene symbols.
count_column	the index of column containing counts.
filter_label	name of low count column being returned.
threshold	value below which counts are considered low (default: 1).

cancerit/RCRISPR documentation built on April 26, 2023, 10:12 p.m.