SBS_counts: Extract SBS count data

In caravagnalab/CNAqc: CNAqc - Copy Number Analysis quality check

Extract SBS count data

Description

Extract SBS data for 96 contexts and 6 possible substitutions, in matrix format.

Usage

SBS_counts(x)

Arguments

x	A CNAqc object.

Value

A one-row matrix with SBS data for 96 contexts and 6 possible substitutions.

Examples

## Not run: 
data('example_dataset_CNAqc')
x = init(mutations = example_dataset_CNAqc$mutations, cna =example_dataset_CNAqc$cna, purity = example_dataset_CNAqc$purity)

x = SBS(x)

# SBS analysis
print(SBS_counts(x))

## End(Not run)

caravagnalab/CNAqc documentation built on Feb. 28, 2025, 12:08 p.m.