subset_by_segment_minmutations: Retain clonal segments with minimum number of mutations.

In caravagnalab/CNAqc: CNAqc - Copy Number Analysis quality check

Retain clonal segments with minimum number of mutations.

Description

It retains only the set of clonal segments that have mapped at least 'n' mutations mapped.

Usage

subset_by_segment_minmutations(x, n = 50)

Arguments

x	A CNAqc object.
n	The minimum number of mutations per segment.

Value

A CNAqc object that should have less segments.

Examples

data('example_dataset_CNAqc', package = 'CNAqc')
x = init(mutations = example_dataset_CNAqc$mutations, cna = example_dataset_CNAqc$cna, purity = example_dataset_CNAqc$purity)

subset_by_segment_minmutations(x, 0)
subset_by_segment_minmutations(x, 10)

caravagnalab/CNAqc documentation built on Oct. 31, 2024, 3:54 a.m.