subset_by_segment_totalcn: Subset clonal simple segments total copy number.

In caravagnalab/CNAqc: CNAqc - Copy Number Analysis quality check

Subset clonal simple segments total copy number.

Description

Retains only a subset of clonal simple segments, e.g., all segments with total ploidy 2.

Usage

subset_by_segment_totalcn(x, totalcn)

Arguments

x	A CNAqc object.
totalcn	The total (Major + minor) copy numbers to filter.

Value

x A new CNAqc object with subset data.

Examples

data('example_dataset_CNAqc', package = 'CNAqc')
x = init(mutations = example_dataset_CNAqc$mutations, cna = example_dataset_CNAqc$cna, purity = example_dataset_CNAqc$purity)

subset_by_segment_totalcn(x, 2)

caravagnalab/CNAqc documentation built on Feb. 28, 2025, 12:08 p.m.