Man pages for carolinafishes/PhyInformR
Rapid Calculation of Phylogenetic Information Content
| allmodel.signal.noise | A function to compute results of QIRP, QIHP, and QIPP... |
| Approximator | Quantify Quartet Resolution Probabilities Using 2012... |
| cluster.signal.noise | Quantify Quartet Resolution Probabilities Using 2012... |
| defined.multi.profile | A function to plot phylogenetic informativeness profiles... |
| informativeness.profile | A function to plot phylogenetic informativeness profiles |
| multi.profile | A function to plot phylogenetic informativeness profiles... |
| parallel.cluster.signal.noise | Quantify Quartet Resolution Probabilities Using 2012... |
| Plot.Another.TreeSI | A function to visualize QIRP of additional data across a tree... |
| plotPosterior | A function to visualize outputs of QIRP, QIHP, and QIPP... |
| PlotTreeSI | A funtion to visualize QIRP across a tree topology |
| prumetalrates | Rates for prumetal dataset |
| rag1 | Rates rag1 dataset |
| sample.rates | Simulated rates |
| sample.tree | Sample tree |
| sample.tree2 | Another Sample tree |
| space.maker | Core Function required to assemble heatmaps of QIRP as in... |
| space.maker.narrow | Core Function required to assemble more fine-scale heatmaps... |
| su.bayes | A function to compute results of QIRP, QIHP, and QIPP across... |
