space.maker: Core Function required to assemble heatmaps of QIRP as in...
In carolinafishes/PhyInformR: Rapid Calculation of Phylogenetic Information Content

Description Usage Arguments Value Author(s) References Examples

Core function required to create heatmaps as in Prum et al. 2015.

1	space.maker(rateVector, t, s)

`rateVector`	An object containing a vector of site rates transformed to class "matrix"
`t`	Time of quartet (e.g, bigT from Townsend et al. 2012)
`s`	A number representing the character state space that generated the site rates (e.g., s=2 for binary data)

Computes a range of QIRP values

A. Dornburg

Townsend, J. P., Su, Z., and Tekle, Y. I. “Phylogenetic Signal and Noise: Predicting the Power of a Data Set to Resolve Phylogeny” Systematic biology 61, no. 5 (2012): 835–849. Prum, R. O., Berv, J. S., Alex, D., Field, D. J., Townsend, J. P., Lemmon, E. M., and Lemmon, A. R. “A Comprehensive Phylogeny of Birds (Aves) Using Targeted next-Generation DNA Sequencing” Nature 526, no. 7574 (2015): 569–573.