informativeness.profile: A function to plot phylogenetic informativeness profiles
In carolinafishes/PhyInformR: Rapid Calculation of Phylogenetic Information Content

Description Usage Arguments Value Author(s) References Examples

Plot phylogenetic informativeness profiles

1	informativeness.profile(rate.vector, tree, codon = "FALSE", values = "display")

`rate.vector`	site rate vector, converted to class 'matrix'
`tree`	A phylogenetic tree
`codon`	True or false: whether to partition a given site rate matrix by codon
`values`	'display' or 'off': whether to return PI values for each time

Graphical display of phylogenetic informativeness

A. Dornburg

Townsend, J. P. “Profiling Phylogenetic Informativeness” Systematic biology 56, no. 2 (2007): 222–231.

library("ape")
library("splines")
read.tree(system.file("extdata","polypterus_trees.phy",package="PhyInformR"))->trees
trees[[1]]->tree
as.matrix(rag1)->rates
informativeness.profile(rates, tree, codon = "FALSE", values = "display")