Approximator: Quantify Quartet Resolution Probabilities Using 2012...
In carolinafishes/PhyInformR: Rapid Calculation of Phylogenetic Information Content
Description
Usage
Arguments
Author(s)
References
Examples
Description
Quantify QIRP, QIHP, or QIPP using the equations from Townsend et al. 2012.
Usage
1
Approximator(t, t0, rateVector, s)
Arguments
t
Time from tip of tree to focal internode
t0
Focal internode length
rateVector
An object containing a vector of site rates transformed to class "matrix"
s
A number representing the character state space that generated the site rates (e.g., s=2 for binary data)
Author(s)
A. Dornburg
References
Townsend, J. P., Su, Z., and Tekle, Y. I. “Phylogenetic Signal and Noise: Predicting the Power of a Data Set to Resolve Phylogeny” Systematic biology 61, no. 5 (2012): 835–849.
Examples
1
2
as.matrix(rag1)->rr
Approximator(100,0.5,rr,3)
carolinafishes/PhyInformR documentation built on May 13, 2019, 12:50 p.m.
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Description Usage Arguments Author(s) References Examples
Description
Quantify QIRP, QIHP, or QIPP using the equations from Townsend et al. 2012.
Usage
1 | Approximator(t, t0, rateVector, s)
|
Arguments
t |
Time from tip of tree to focal internode |
t0 |
Focal internode length |
rateVector |
An object containing a vector of site rates transformed to class "matrix" |
s |
A number representing the character state space that generated the site rates (e.g., s=2 for binary data) |
Author(s)
A. Dornburg
References
Townsend, J. P., Su, Z., and Tekle, Y. I. “Phylogenetic Signal and Noise: Predicting the Power of a Data Set to Resolve Phylogeny” Systematic biology 61, no. 5 (2012): 835–849.
Examples
1 2 | as.matrix(rag1)->rr
Approximator(100,0.5,rr,3)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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