space.maker.narrow: Core Function required to assemble more fine-scale heatmaps...

Description Usage Arguments Value Author(s) References Examples

Description

Core function required to create heatmaps as in Prum et al. 2015.

Usage

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space.maker.narrow(rateVector, t, s)

Arguments

rateVector

An object containing a vector of site rates transformed to class "matrix"

t

Time of quartet (e.g, bigT from Townsend et al. 2012)

s

A number representing the character state space that generated the site rates (e.g., s=2 for binary data)

Value

Computes a range of QIRP values

Author(s)

A. Dornburg

References

Townsend, J. P., Su, Z., and Tekle, Y. I. “Phylogenetic Signal and Noise: Predicting the Power of a Data Set to Resolve Phylogeny” Systematic biology 61, no. 5 (2012): 835–849. Prum, R. O., Berv, J. S., Alex, D., Field, D. J., Townsend, J. P., Lemmon, E. M., and Lemmon, A. R. “A Comprehensive Phylogeny of Birds (Aves) Using Targeted next-Generation DNA Sequencing” Nature 526, no. 7574 (2015): 569–573.

Examples

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carolinafishes/PhyInformR documentation built on May 13, 2019, 12:50 p.m.