PlotTreeSI: A funtion to visualize QIRP across a tree topology
In carolinafishes/PhyInformR: Rapid Calculation of Phylogenetic Information Content

Description Usage Arguments Value Author(s) References Examples

A funtion to visualize QIRP across a tree topology

1	PlotTreeSI(tree, ratevector, s)

`tree`	A phylogenetic tree
`ratevector`	site rate vector, converted to class 'matrix'
`s`	A number representing the character state space that generated the site rates (e.g., s=2 for binary data)

A graphical representation of QIRP at every node

A. Dornburg

Hwang, J., Jonathan, H., Qi, Z., Yang, Z. L., Zheng, W., and Townsend, J. P. “Solving the Ecological Puzzle of Mycorrhizal Associations Using Data from Annotated Collections and Environmental Samples - an Example of Saddle Fungi” Environmental microbiology reports 7, no. 4 (2015): 658–667.

library("ape")
as.matrix(rag1)->rr
read.tree(system.file("extdata","polypterus_trees.phy",package="PhyInformR"))->trees
trees[[1]]->tree
PlotTreeSI(tree,rr,3)