Files in caseywdunn/agalmar
A Collection of Tools for Analyzing Agalma Expression Projects
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/agalmar.R
R/data.R
R/imports.R
R/utility_functions.R
README.md
agalmar-manual.pdf
agalmar.Rproj
data/janedoe.RData
man/DGEList-class.Rd
man/Expression-class.Rd
man/Expression.Rd
man/agalmar.Rd
man/apply_normalizations.Rd
man/create_DESeq2-Expression-formula-method.Rd
man/create_DESeq2.Rd
man/dataframe_to_node_labels.Rd
man/decompose_orthologs.Rd
man/get_lane.Rd
man/get_run.Rd
man/get_tip_info.Rd
man/has_species.Rd
man/janedoe.Rd
man/nhx_label_to_list.Rd
man/node_support.Rd
man/parse_gene_tree.Rd
man/plot_matrix.Rd
man/species-Expression-method.Rd
man/species.Rd
man/summarize_edges.Rd
man/summarize_libraries-Expression-method.Rd
man/summarize_libraries.Rd
man/summarize_nodes.Rd
man/summarize_reference-Expression-method.Rd
man/summarize_reference.Rd
man/summary_libraries.Rd
man/summary_references.Rd
tests/testthat.R
tests/testthat/test_expression.R
tests/testthat/test_general.R
