API for cavei/houseOfClipUtility
Clip Legacy Functions
| Global functions | |
|---|---|
| ReactomePathwaysRelation | Man page |
| averageReplicateMatrices | Man page |
| compPCs | Man page |
| compPCsWithResampling | Man page |
| computeFreqs | Man page |
| computePCs | Man page |
| computePCsWithResampling | Man page |
| computeSimPATHyParameters | Man page |
| convertIds | Man page |
| createPath | Man page |
| createSignificanceMask | Man page |
| downloadPathwayRelationFromReactome | Man page |
| estimateCov | Man page |
| estimateExprCov | Man page |
| extractCliquesFromDag | Man page |
| filterDirected | Man page |
| fromChain2edgeList | Man page |
| getPathFathers | Man page |
| id2name | Man page |
| makeDegreesEven | Man page |
| makePositiveDefinite | Man page |
| makeTheExpressionDataset | Man page |
| makeTheMethylationDataset | Man page |
| makeTheMutationDataset | Man page |
| makeUniformExpressionDataset | Man page |
| makeUniformMethylationDataset | Man page |
| makeUniformMutationsDataset | Man page |
| mapFromDict | Man page |
| mapPathwaysIDfromGraphite | Man page |
| mergeGraphitePathways | Man page |
| minOrNA | Man page |
| mmmoralize | Man page |
| plotFrequencies | Man page |
| plotPathInGraphNEL | Man page |
| randomExpression | Man page |
| removeSelfLoops | Man page |
| reverseDict | Man page |
| simulateData | Man page |
| sparseCompPCs | Man page |
| sparseCompPCsWithResampling | Man page |
| subPathway | Man page |
| summarizeOmicsResByMinPvalue | Man page |
| topoCompPCs | Man page |
| topoCompPCsWithResampling | Man page |
