simulate_methylation_dataset: Simulate a methylation dataset with survival annotation

In cavei/houseOfClipUtility: Clip Legacy Functions

Description

To simulate a dataset we need a real pathway.

To simulate a dataset we need a real pathway.

Usage

makeTheMethylationDataset(pathway, impactThisGenes, impactMeans, ann,
  omicName = "x")

makeUniformMethylationDataset(pathway, ann, omicName = "x")

Arguments

pathway	a Pathway
impactThisGenes	the DEG in the aberrant signal chain
impactMeans	list of the same length of impactThisGenes with lower and upper bounds for simulation
ann	survival annotations
omicName	the name of the omics to consider

Value

list

exprs	expression
annotation	the survival annotation
graph	a graphNEL
chain	the chain of selectP

cavei/houseOfClipUtility documentation built on May 12, 2019, 5:23 p.m.