Files in cavei/houseOfClipUtility
Clip Legacy Functions
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/covarianceEstimateFunctions.R
R/expression_dataset_generator.R
R/general-utility.R
R/graph-processing-functions.R
R/graphNEL_pathways_utility.R
R/graphite_pathways_utilities.R
R/handle-graphite-pathways.R
R/makePositiveDefinite.R
R/methylation_dataset_generator.R
R/mutation-cnv_dataset_generation.R
R/pathway-processing-functions.R
R/pathway-relations.R
R/pca-functions-with-resampling.R
R/pca-functions.R
R/simulate-survival-annotation.R
R/superExactTest.R
data-raw/ReactomePathwaysRelation.txt
data-raw/create_script.R
data/ReactomePathwaysRelation.rda
houseOfClipUtility.Rproj
inst/extdata/ReactomePathwaysRelation.txt
man/ReactomePathwaysRelation.Rd
man/averageReplicateMatrices.Rd
man/computeFreqs.Rd
man/computePCs.Rd
man/computePCsWithResampling.Rd
man/computeSimPATHyParameters.Rd
man/convertIds.Rd
man/createSignificanceMask.Rd
man/downloadPathwayRelationFromReactome.Rd
man/estimateCov.Rd
man/estimateExprCov.Rd
man/filterDirected.Rd
man/getPathFathers.Rd
man/graph-processing.Rd
man/id2name.Rd
man/makeDegreesEven.Rd
man/makePositiveDefinite.Rd
man/mapFromDict.Rd
man/mapPathwaysIDfromGraphite.Rd
man/mergeGraphitePathways.Rd
man/minOrNA.Rd
man/plotFrequencies.Rd
man/plotPathInGraphNEL.Rd
man/randomExpression.Rd
man/removeSelfLoops.Rd
man/reverseDict.Rd
man/simulateData.Rd
man/simulate_expression_dataset.Rd
man/simulate_methylation_dataset.Rd
man/simulate_mutation_dataset.Rd
man/subPathway.Rd
man/summarizeOmicsResByMinPvalue.Rd
tests/testthat.R
tests/testthat/test-general-utility.R
tests/testthat/test-makeTheDataset.R
tests/testthat/test-pca.R
tests/testthat/test-supertest.R
