simulate_expression_dataset: Simulate an expression dataset from survival annotation

In cavei/houseOfClipUtility: Clip Legacy Functions

Description

To simulate a dataset we need a real pathway.

Usage

makeTheExpressionDataset(pathway, pathBoundaries, deInChain, deInPath, w,
  ann, omicName = "x", augmentedMu = 2, strong = FALSE)

makeUniformExpressionDataset(pathway, ann, omicName = "x")

Arguments

pathway	a Pathway
pathBoundaries	the start and end point of the disregulated chain
deInChain	the DEG in the aberrant signal chain
deInPath	the DEG in Pathway
w	the index of the path to choose
ann	survival annotations
omicName	the name of the omics to consider
augmentedMu	magnetude of mean increment
strong	should the increment be really marked

Value

list

exprs	expression
annotation	the survival annotation
graph	a graphNEL
chain	the chain of selectP

cavei/houseOfClipUtility documentation built on May 12, 2019, 5:23 p.m.