API for cbg-ethz/pathTiMEx
Joint Inference of Mutually Exclusive Driver Pathways and their Progression Dynamics
| Global functions | |
|---|---|
| addAllGenesNotInTiMEx | Man page |
| addNoise | Man page |
| addPathBinary | Man page |
| cleanGroupys | Man page |
| clustMetrIterTiMEx | Man page |
| compareStructs | Man page |
| computeScore | Man page |
| count.duplicates | Man page |
| countPerfSims | Man page |
| doPatForCBN | Man page |
| drawSamples | Man page |
| genRandomPoset | Man page |
| generateFixedModel | Man page |
| generateRandomModel | Man page |
| generateStructureModel | Man page |
| iterTiMExBinaryMats | Man page |
| iterTiMExSims | Man page |
| make_linear_poset | Man page |
| optGroups | Man page |
| pathTiMEx | Man page |
| pathTiMEx-package | Man page |
| plotPoset | Man page |
| plotPosetPaths | Man page |
| plot_poset | Man page Man page |
| returnAssignment | Man page |
| returnMetricsClust | Man page |
| runCBN | Man page |
| sampleMEPathways | Man page |
| summarizeSims | Man page |
| topologicalSort | Man page |
| trans_reduction | Man page |
| transformAndWritePoset | Man page |
| writePosetForCBN | Man page |
