addPathBinary: Summarizes the inferred groups
In cbg-ethz/pathTiMEx: Joint Inference of Mutually Exclusive Driver Pathways and their Progression Dynamics
Description
Usage
Arguments
Details
Value
Author(s)
Description
addPathBinary summarizes the assignment of genes to
pathways as a binary matrix.
Usage
1
addPathBinary(resIterBinTiMEx)
Arguments
resIterBinTiMEx
structure with the results of running TiMEx
iteratively on any input binary matrix, as returned by the function
iterTiMExBinaryMats.
Details
This function appends to the input structure the field
genesBinary, representing the assignment of the identified genes to
pathway, in the form of a binary matrix.
Value
resIterBinTiMEx, the input structure, with the added field
genesBinary. genesBinary is a matrix with rows the
identified mutually exclusive pathways and columns the genes. Each entry
[i,j] = 1 if gene j was identified in pathway i and 0 otherwise.
Author(s)
Simona Constantinescu, simona.constantinescu@bsse.ethz.ch
cbg-ethz/pathTiMEx documentation built on May 13, 2019, 2:03 p.m.
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Description Usage Arguments Details Value Author(s)
Description
addPathBinary summarizes the assignment of genes to
pathways as a binary matrix.
Usage
1 | addPathBinary(resIterBinTiMEx)
|
Arguments
resIterBinTiMEx |
structure with the results of running TiMEx
iteratively on any input binary matrix, as returned by the function
|
Details
This function appends to the input structure the field
genesBinary, representing the assignment of the identified genes to
pathway, in the form of a binary matrix.
Value
resIterBinTiMEx, the input structure, with the added field
genesBinary. genesBinary is a matrix with rows the
identified mutually exclusive pathways and columns the genes. Each entry
[i,j] = 1 if gene j was identified in pathway i and 0 otherwise.
Author(s)
Simona Constantinescu, simona.constantinescu@bsse.ethz.ch
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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