API for cbg-ethz/pathTiMEx
Joint Inference of Mutually Exclusive Driver Pathways and their Progression Dynamics

Global functions
addAllGenesNotInTiMEx Man page Source code
addNoise Man page Source code
addPathBinary Man page Source code
cleanGroupys Man page Source code
clustMetrIterTiMEx Man page Source code
compareStructs Man page Source code
computeScore Man page Source code
count.duplicates Man page Source code
countPerfSims Man page Source code
createInitialGroups Source code
doPatForCBN Man page Source code
drawSamples Man page Source code
genRandomPoset Man page Source code
generateFixedModel Man page Source code
generateRandomModel Man page Source code
generateStructureModel Man page Source code
iterTiMExBinaryMats Man page Source code
iterTiMExSims Man page Source code
make_linear_poset Man page Source code
mapStructures Source code
mergeGroups Source code
optGroups Man page Source code
optGroups2 Source code
pathTiMEx Man page Source code
pathTiMEx-package Man page
plotMEGroup Source code
plotPoset Man page Source code
plotPosetPaths Man page Source code
plot_poset Man page Man page
prepareMatGGplot Source code
returnAssignment Man page Source code
returnMetricsClust Man page Source code
runCBN Man page Source code
sampleMEPathways Man page Source code
summarizeSims Man page Source code
topologicalSort Man page Source code
trans_reduction Man page Source code
transformAndWritePoset Man page Source code
transformAndWritePoset2 Source code
transformAndWritePosetInitial Source code
transformAndWritePosetLinear Source code
writePosetForCBN Man page Source code
cbg-ethz/pathTiMEx documentation built on May 12, 2017, 12:05 a.m.