Joint Inference of Mutually Exclusive Driver Pathways and their Progression Dynamics

Global functions | |
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addAllGenesNotInTiMEx | Man page Source code |

addNoise | Man page Source code |

addPathBinary | Man page Source code |

cleanGroupys | Man page Source code |

clustMetrIterTiMEx | Man page Source code |

compareStructs | Man page Source code |

computeScore | Man page Source code |

count.duplicates | Man page Source code |

countPerfSims | Man page Source code |

createInitialGroups | Source code |

doPatForCBN | Man page Source code |

drawSamples | Man page Source code |

genRandomPoset | Man page Source code |

generateFixedModel | Man page Source code |

generateRandomModel | Man page Source code |

generateStructureModel | Man page Source code |

iterTiMExBinaryMats | Man page Source code |

iterTiMExSims | Man page Source code |

make_linear_poset | Man page Source code |

mapStructures | Source code |

mergeGroups | Source code |

optGroups | Man page Source code |

optGroups2 | Source code |

pathTiMEx | Man page Source code |

pathTiMEx-package | Man page |

plotMEGroup | Source code |

plotPoset | Man page Source code |

plotPosetPaths | Man page Source code |

plot_poset | Man page Man page |

prepareMatGGplot | Source code |

returnAssignment | Man page Source code |

returnMetricsClust | Man page Source code |

runCBN | Man page Source code |

sampleMEPathways | Man page Source code |

summarizeSims | Man page Source code |

topologicalSort | Man page Source code |

trans_reduction | Man page Source code |

transformAndWritePoset | Man page Source code |

transformAndWritePoset2 | Source code |

transformAndWritePosetInitial | Source code |

transformAndWritePosetLinear | Source code |

writePosetForCBN | Man page Source code |

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