plotPosetPaths: Plots a poset on pathways
In cbg-ethz/pathTiMEx: Joint Inference of Mutually Exclusive Driver Pathways and their Progression Dynamics
Description
Usage
Arguments
Details
Value
Author(s)
Description
plotPosetPaths plots a poset on the level of pathways
given as input, by representing the causal relations between pathways,
together with gene membership.
Usage
1
plotPosetPaths(poset, groupsInput, Datamat, size = 30)
Arguments
poset
the poset to be plotted, given as a binary matrix with
relationships between pathways
groupsInput
the assignment of genes to pathways
Datamat
the alterations of genes, represented as a binary matrix
size
the size of the names of events, default to 30
Details
The column names of the poset should be the names of the events,
and they will be used for plotting. This function only works for groups
generated after the stochastic search step.
Value
the plot of the input poset, together with assignment of genes to
pathways
Author(s)
Simona Constantinescu, simona.constantinescu@bsse.ethz.ch
cbg-ethz/pathTiMEx documentation built on May 13, 2019, 2:03 p.m.
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Description Usage Arguments Details Value Author(s)
Description
plotPosetPaths plots a poset on the level of pathways
given as input, by representing the causal relations between pathways,
together with gene membership.
Usage
1 | plotPosetPaths(poset, groupsInput, Datamat, size = 30)
|
Arguments
poset |
the poset to be plotted, given as a binary matrix with relationships between pathways |
groupsInput |
the assignment of genes to pathways |
Datamat |
the alterations of genes, represented as a binary matrix |
size |
the size of the names of events, default to 30 |
Details
The column names of the poset should be the names of the events, and they will be used for plotting. This function only works for groups generated after the stochastic search step.
Value
the plot of the input poset, together with assignment of genes to pathways
Author(s)
Simona Constantinescu, simona.constantinescu@bsse.ethz.ch
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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