Files in cbg-ethz/slidr

Discovery of mutation-specific synthetic lethal partners from large pan-cancer perturbation screens

R/data_process_funcs.R R/liverdata_doc.R R/plot_funcs.R R/sl_test_funcs.R README.md Scripts/CI_matching.R Scripts/Comparison_crispr_goldstd.R Scripts/Comparison_goldstd.R Scripts/Comparison_p53status.R Scripts/Control_exp_prism.R Scripts/Fisher_combine.R Scripts/GOanalysis.R Scripts/Intro_plots.R Scripts/Res1_plots.R Scripts/Res2_plots.R Scripts/Supp1_plots.R Scripts/gen_sticker.R Scripts/prism_barplot.R Scripts/prism_validation.R Scripts/simulation_study.R Scripts/slidr_crispr_run.R Scripts/slidr_fin_run.Rmd Scripts/slidr_scratchpad.Rmd man/IH_CDF.Rd man/LiverData.Rd man/WilcoxSLHits.Rd man/getCelllines.Rd man/getEssentialGenes.Rd man/getPval.Rd man/identifySLHits.Rd man/plotSLBoxplot.Rd man/prepareCNMat.Rd man/prepareCNMatGistic.Rd man/prepareDataObjects.Rd man/prepareMutMat.Rd man/ttestSLHits.Rd tests/testthat.R tests/testthat/test_IHtest.R tests/testthat/test_SLIdentifier.R