API for cbroeckl/csu.pmf.tools
a collection of features used internally at CSU PMF for non-targeted metabolomics data processing

Global functions
adap.to.rc Man page Source code
annotate Man page Source code
annotate.msfinder Man page
annotate.msfinder.gcei Man page
annotation.summary Man page Source code
assign.z Man page Source code
build.gcms.library Source code
build.lcms.library Man page Source code
change.annotation Man page Source code
classyfire.sunburst.plot Man page Source code
cmpd.summary Man page Source code
degolm Man page Source code
doFindmain Man page
editSampleNames Man page Source code
export.msfinder.formulas Man page Source code
filter.by.mass Source code
filter.pathway.conserved Source code
filter.pathway.taxonomy Source code
fooddb2msfinder Man page Source code
get.cids.from.pathways Source code
get.classyfire.local Man page Source code
get.pathway.sources Source code
get.pathways.from.sources Source code
get.pubchem.annotations.all Man page Source code
get.pubchem.lipidmaps.cids Source code
get.pubchem.plant.lipids Source code
get.pubchem.sources Source code
get.taxon.cids Man page Source code
getData Man page Source code
getSmilesInchi Man page Source code
golm.inchikey Man page Source code
impRamSearch Man page Source code
import.adap.kdb Man page Source code
import.msfinder.formulas Man page
import.msfinder.mssearch Man page
import.msfinder.structures Man page
import.sirius Man page
lib.search Man page Source code
make.zip.files Man page Source code
manual.annotation.template Man page Source code
normalize.intensity Man page Source code
pmf.directory.report Man page Source code
pmfDefineExperiment Man page Source code
pmfanova Man page Source code
pmfpca Man page Source code
pmfxcms Man page Source code
pmfxcms.2 Man page Source code
pubchem.taxon.metabolome Man page Source code
rc.cmpd.get.classyfire Man page
rc.cmpd.get.pubchem Man page Source code
rc.cmpd.get.smiles.inchi Man page Source code
rc.run.msfinder Man page Source code Source code
rc.run.msfinder.gc Source code
remove.low.intensity.signals Source code
reportSampleNames Man page Source code
round.masses Source code
startProject Man page
table.to.rc Man page Source code Source code
write.file.summary Man page Source code
write.gcei.mat Man page Source code
cbroeckl/csu.pmf.tools documentation built on Jan. 26, 2024, 6:27 p.m.