Man pages for cbroeckl/csu.pmf.tools
a collection of features used internally at CSU PMF for non-targeted metabolomics data processing

adap.to.rcadap.to.rc
annotateevaluate ramSearch, MSFinder mssearch, MSFinder Structure,...
annotate.msfinderannotate.msfinder
annotate.msfinder.gceiannotate.msfinder.gcei
annotation.summaryannotation.summary()
assign.zassign.z
build.lcms.librarylib.search
change.annotationevaluate ramSearch, MSFinder mssearch, MSFinder Structure,...
classyfire.sunburst.plotclassyfire.sunburst.plot
cmpd.summarycmpd.summary
degolmconvenient editing of ramclustObj sample names
doFindmaindoFindmain
editSampleNamesconvenient editing of ramclustObj sample names
export.msfinder.formulasexport MSFinder formula prediction results in tabular format.
fooddb2msfinderfoodb2msfinder
get.classyfire.localget.classyfire.local
getDatagetData
get.pubchem.annotations.allget.pubchem.annotations.all
getSmilesInchigetSmilesInchi
get.taxon.cidsget.taxon.cids
golm.inchikeyretrieve inchikeys GOLM msp
import.adap.kdbimport.adap.kdb
import.msfinder.formulasimport.msfinder.formulas
import.msfinder.mssearchimport.MSFinder.mssearch
import.msfinder.structureswrite.methods
import.siriusimport.sirius
impRamSearchimpRamSearch
lib.searchlib.search
make.zip.fileszip selected directories and move to 'report' directory.
manual.annotation.templatemanual.annotation.template
normalize.intensitylib.functions
pmfanovapmfanova
pmfDefineExperimentpmf.defineExperiment
pmf.directory.reportreturns a dataframe of all directories and their size in...
pmfpcapmfpca
pmfxcmspmfxcms
pmfxcms.2pmfxcms
pubchem.taxon.metabolomepubchem.taxon.metabolome
rc.cmpd.get.classyfiregetClassyFire
rc.cmpd.get.pubchemrc.cmpd.get.pubchem
rc.cmpd.get.smiles.inchigetSmilesInchi
rc.run.msfinderrc.run.msfinder
reportSampleNamesconvenient reporting of sample name and design
startProjectstartProject
table.to.rctable.to.rc
write.file.summaryoutput file descriptions for reporting
write.gcei.matwrite.gcei.mat
cbroeckl/csu.pmf.tools documentation built on May 26, 2024, 4:53 p.m.