Man pages for cbroeckl/csu.pmf.tools
a collection of features used internally at CSU PMF for non-targeted metabolomics data processing
| adap.to.rc | adap.to.rc |
| annotate | evaluate ramSearch, MSFinder mssearch, MSFinder Structure,... |
| annotate.msfinder | annotate.msfinder |
| annotate.msfinder.gcei | annotate.msfinder.gcei |
| annotation.summary | annotation.summary() |
| assign.z | assign.z |
| build.lcms.library | lib.search |
| change.annotation | evaluate ramSearch, MSFinder mssearch, MSFinder Structure,... |
| classyfire.sunburst.plot | classyfire.sunburst.plot |
| cmpd.summary | cmpd.summary |
| degolm | convenient editing of ramclustObj sample names |
| doFindmain | doFindmain |
| editSampleNames | convenient editing of ramclustObj sample names |
| export.msfinder.formulas | export MSFinder formula prediction results in tabular format. |
| fooddb2msfinder | foodb2msfinder |
| get.classyfire.local | get.classyfire.local |
| getData | getData |
| get.pubchem.annotations.all | get.pubchem.annotations.all |
| getSmilesInchi | getSmilesInchi |
| get.taxon.cids | get.taxon.cids |
| golm.inchikey | retrieve inchikeys GOLM msp |
| import.adap.kdb | import.adap.kdb |
| import.msfinder.formulas | import.msfinder.formulas |
| import.msfinder.mssearch | import.MSFinder.mssearch |
| import.msfinder.structures | write.methods |
| import.sirius | import.sirius |
| impRamSearch | impRamSearch |
| lib.search | lib.search |
| make.zip.files | zip selected directories and move to 'report' directory. |
| manual.annotation.template | manual.annotation.template |
| normalize.intensity | lib.functions |
| pmfanova | pmfanova |
| pmfDefineExperiment | pmf.defineExperiment |
| pmf.directory.report | returns a dataframe of all directories and their size in... |
| pmfpca | pmfpca |
| pmfxcms | pmfxcms |
| pmfxcms.2 | pmfxcms |
| pubchem.taxon.metabolome | pubchem.taxon.metabolome |
| rc.cmpd.get.classyfire | getClassyFire |
| rc.cmpd.get.pubchem | rc.cmpd.get.pubchem |
| rc.cmpd.get.smiles.inchi | getSmilesInchi |
| rc.run.msfinder | rc.run.msfinder |
| reportSampleNames | convenient reporting of sample name and design |
| startProject | startProject |
| table.to.rc | table.to.rc |
| write.file.summary | output file descriptions for reporting |
| write.gcei.mat | write.gcei.mat |
