reportSampleNames: convenient reporting of sample name and design

In cbroeckl/csu.pmf.tools: a collection of features used internally at CSU PMF for non-targeted metabolomics data processing

convenient reporting of sample name and design

Description

convenient reporting of sample name and design

Usage

reportSampleNames(
  ramclustObj = NULL,
  which.data = "SpecAbund",
  delim = "-",
  cmpdlabel = "cmpd",
  filename = NULL
)

Arguments

ramclustObj	ramclustR object summarize
which.data	character; which dataset (SpecAbund or SpecAbundAve) to perform PCA on.
delim	character; "-" by default - the delimiter for parsing sample names to factors
cmpdlabel	= "cmpd"; label the data with the annotation. can also be set to 'ann' for column names assigned as annotatins.

Details

convenience function reporting of sample names. writes text file with sample summary.

Value

returns a ramclustR Object, with sample summary appended to 'sampleSummary'slot.

Author(s)

Corey Broeckling

cbroeckl/csu.pmf.tools documentation built on Sept. 30, 2022, 5:40 p.m.