rc.run.msfinder: rc.run.msfinder

View source: R/rc.run.msfinder.R View source: R/msfinder.R

rc.run.msfinderR Documentation

rc.run.msfinder

Description

run MSFinder for LC-MS/MS annotation

Usage

rc.run.msfinder(
  msfinder.dir = "C:/MSFinder/msfinder",
  input.dir = "R:/RSTOR-PMF/Temp/mat",
  param.file = "R:/RSTOR-PMF/Software/MSFinder/MSFINDER.INI"
)

Arguments

msfinder.dir

directory containing the msfinder executable file

input.dir

directory containing all .mat files

param.file

file (with full path) to msfinder paramater file

Details

function to call msfinder on linux server

Value

nothing - output written to drive.

Author(s)

Corey Broeckling


cbroeckl/csu.pmf.tools documentation built on May 21, 2024, 1:26 a.m.