startProject: startProject

In cbroeckl/csu.pmf.tools: a collection of features used internally at CSU PMF for non-targeted metabolomics data processing

startProject

Description

startProject

Usage

startProject(
  prep.batch.size = 48,
  run.batch.size = 96,
  QC = 6,
  randomize = TRUE,
  stack = FALSE,
  prep.blanks = 3,
  LTR = 0,
  remove.invariant.factors = TRUE,
  destination.dir = "R:/RSTOR-PMF/Projects/",
  sub.project.name = NULL
)

Arguments

prep.batch.size	integer - what is the sample preparation batch size? default = 48.
run.batch.size	integer - what is the analytical batch size? default = 96.
QC	integer - every 'QC' injections will be a QC sample. Default = 6
randomize	logical - should prep and run order be randomized?
stack	should the injection sample list be set up for stacked injections (TOF platforms only, currenly)
prep.blanks	integer - how many extraction blanks per prep batch? prep.blanks will be inserted into the prep sequence in random sequence position(s).
LTR	logical - If TRUE, an long term reference sample line will be included at the beginning and end of each run batch, with each LTR followed by an inserted solvent blank.
destination.dir	valid path to directory target output directory, by default: "R:/RSTOR-PMF/Projects/"

Details

take info from iLab and iLab sample submission form and create sample prep and data acquisition templates and directories on the R:

Value

returns nothing, files written to directory selected by user.

Author(s)

Corey Broeckling

cbroeckl/csu.pmf.tools documentation built on Sept. 30, 2022, 5:40 p.m.