break.iqm-class: Data class break.iqm

In ccbiolab/svpluscnv: svpluscnv: analysis and visualization of complex structural variation data

Description

Class to store breakpoint annotations in association with genomic features (e.g. gene loci)

Arguments

summary	(data.table): the frequency of gains and losses in each defined genomic bin
brk.mat	(numeric): a matrix of genomic bins versus samples
chrlimits	(data.frame): a table containing the chromosome limit coordinates and global genomic coordinates
plot	(graphical): a recorded plot object
param	(list): a list of parametres provided

Value

an instance of the class 'cnvfreq'

ccbiolab/svpluscnv documentation built on Sept. 9, 2020, 4:52 a.m.