ccbiolab/svpluscnv: svpluscnv: analysis and visualization of complex structural variation data

svpluscnv R package is a "swiss army knife"" for the integration and interpretation of orthogonal datasets including copy number variant (CNV) segmentation profiles and sequencing-based structural variant calls (SVC). The package implements analysis and visualization tools to evaluate chromosomal instability and ploidy, identify genes harboring recurrent SVs and systematically characterize hot-spot genomic locations harboring complex rearrangements such as chromothripsis and chromoplexia.

Getting started

Package details

Author person("Gonzalo", "Lopez", role = c("aut", "cre"), email = "", comment = c(ORCID = "0000-0002-5092-1284")) person("Laura", "Egolf", role = c("aut"), email = "", comment = c(ORCID = "0000-0002-7103-4801")) person("Federico", "Giorgi", role = c("ctb"), email = "", comment = c(ORCID = "0000-0002-7325-9908"))
Bioconductor views CopyNumberVariation GenomicVariation Sequencing StructuralVariation VariantAnnotation
Maintainer Gonzao Lopez <>
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
ccbiolab/svpluscnv documentation built on Sept. 9, 2020, 4:52 a.m.