ccbiolab/svpluscnv: svpluscnv: analysis and visualization of complex structural variation data
svpluscnv R package is a "swiss army knife"" for the integration and interpretation of orthogonal datasets including copy number variant (CNV) segmentation profiles and sequencing-based structural variant calls (SVC). The package implements analysis and visualization tools to evaluate chromosomal instability and ploidy, identify genes harboring recurrent SVs and systematically characterize hot-spot genomic locations harboring complex rearrangements such as chromothripsis and chromoplexia.
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Package details |
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| Author | person("Gonzalo", "Lopez", role = c("aut", "cre"), email = "gonzolgarcia@gmail.com", comment = c(ORCID = "0000-0002-5092-1284")) person("Laura", "Egolf", role = c("aut"), email = "laura.e.egolf@gmail.com", comment = c(ORCID = "0000-0002-7103-4801")) person("Federico", "Giorgi", role = c("ctb"), email = "federico.giorgi@gmail.com", comment = c(ORCID = "0000-0002-7325-9908")) |
| Bioconductor views | CopyNumberVariation GenomicVariation Sequencing StructuralVariation VariantAnnotation |
| Maintainer | Gonzao Lopez <gonzolgarcia@gmail.com> |
| License | GPL-3 |
| Version | 0.99.1 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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