med.segmean: Median sample CNV
In ccbiolab/svpluscnv: svpluscnv: analysis and visualization of complex structural variation data
Description
Usage
Arguments
Value
Examples
View source: R/segment.means.r
Description
Obtain the median weighted segment mean from a segmentaton file; The weighted median refers to the logR that occupies a center of all segments ordered by their log ratio
Usage
1
med.segmean(cnv)
Arguments
cnv
(S4) an object of class svcnvio containing data type 'cnv' initialized by validate.cnv
Value
(numeric) a vector containing the median logR value of a segmented data.frame
Examples
1
2
3
4
5
## validate input CNV data.frames
cnv <- validate.cnv(segdat_lung_ccle)
med_seg_mean <- med.segmean(cnv)
head(med_seg_mean)
ccbiolab/svpluscnv documentation built on Sept. 9, 2020, 4:52 a.m.
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Description Usage Arguments Value Examples
View source: R/segment.means.r
Description
Obtain the median weighted segment mean from a segmentaton file; The weighted median refers to the logR that occupies a center of all segments ordered by their log ratio
Usage
1 | med.segmean(cnv)
|
Arguments
cnv |
(S4) an object of class svcnvio containing data type 'cnv' initialized by validate.cnv |
Value
(numeric) a vector containing the median logR value of a segmented data.frame
Examples
1 2 3 4 5 | ## validate input CNV data.frames
cnv <- validate.cnv(segdat_lung_ccle)
med_seg_mean <- med.segmean(cnv)
head(med_seg_mean)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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