dngr: Generate GRanges of downstream regions
In ccbiolab/svpluscnv: svpluscnv: analysis and visualization of complex structural variation data
Description
Usage
Arguments
Value
Description
Generate GRanges of downstream regions
Usage
1
dngr(ggr, dnstr = 50000)
Arguments
ggr
(S4) a GenomicRanges object containing gene annotations. It is crutial that the genome version 'genesgr' and the input 'sv' are the same. The GRanges object must contain 'strand' and a metadata field 'gene_id' with unique values. Seqnames are expected in the format (chr1, chr2, ...).
dnstr
(numeric) size in base pairs to define gene downstream region onto which breakpoint overlaps will be identified. The strand value, start and stop positions defined in genesgr will be used to create a GRanges object of downstream regions.
Value
(S4) aa GRanges object of downstream regions
ccbiolab/svpluscnv documentation built on Sept. 9, 2020, 4:52 a.m.
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Description Usage Arguments Value
Description
Generate GRanges of downstream regions
Usage
1 | dngr(ggr, dnstr = 50000)
|
Arguments
ggr |
(S4) a GenomicRanges object containing gene annotations. It is crutial that the genome version 'genesgr' and the input 'sv' are the same. The GRanges object must contain 'strand' and a metadata field 'gene_id' with unique values. Seqnames are expected in the format (chr1, chr2, ...). |
dnstr |
(numeric) size in base pairs to define gene downstream region onto which breakpoint overlaps will be identified. The strand value, start and stop positions defined in genesgr will be used to create a GRanges object of downstream regions. |
Value
(S4) aa GRanges object of downstream regions
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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