chromosome.limit.coords: Chromosome limit map

In ccbiolab/svpluscnv: svpluscnv: analysis and visualization of complex structural variation data

Description

Obtain chromosome start and end positions based on mapped regions from CNV segmentation data

Usage

chromosome.limit.coords(cnv)

Arguments

cnv	(S4) an object of class svcnvio containing data type 'cnv' initialized by validate.cnv

Value

data.table indicating start and end mapped positions of each chromosome

Examples

## validate input data.frame
cnv <- validate.cnv(segdat_lung_ccle)

chr.lim <- chromosome.limit.coords(cnv)

ccbiolab/svpluscnv documentation built on Sept. 9, 2020, 4:52 a.m.