ma_terms: Calculates all mass action terms prod_{i \in N^-} S_i^|N_i| In cdiener/dycone: dycone - analyze the dynamic landscape of metabolome data

∏_{i \in N^-} S_i^|N_i|

Description

Calculates all mass action terms

∏_{i \in N^-} S_i^|N_i|

Usage

 1 ma_terms(s_matrix, concs) 

Arguments

 s_matrix The stochiometric matrix. concs The concentrations of the substrates. Can be one of two A named vector containing the concentratiions for all substrates, where its names come from the same set as the rownames of S. A data frame with one column names 'name' containing the names and all other columns containing multiple concentration entries.

Value

Either vector of length n_r containing the mass-action terms, if concs was a vector, or a matrix with n_r rows containing the mass-action in its columns.

stoichiometry to calculate the stochiometric matrix.
 1 2 3 4 5 data(eryth) S <- stoichiometry(eryth) concs <- runif(nrow(S)) names(concs) <- rownames(S) mats <- ma_terms(S, concs)