stoichiometry: Calculates the stochiometric matrix for a list of reactions.

In cdiener/dycone: dycone - analyze the dynamic landscape of metabolome data

Description

Calculates the stochiometric matrix for a list of reactions.

Usage

stoichiometry(reacts, reversible = FALSE, const = NULL,
  sparse = FALSE)

Arguments

reacts	The reaction list to be used.
reversible	Whether the stochiometric matrix can include reversible reactions.
const	A vector of species names that are assumed to be invariant and will be dropped from the stochiometric matrix. The default is not to drop any species.
sparse	Whether the stoichiometric matrix should saved in a sparse format. Reguires the Matrix package to be installed.

Value

The stochiometric matrix with dimension n_s x n_r.

See Also

read_reactions to read a reaction list from a file.

Examples

data(eryth)
S <- stoichiometry(eryth)

cdiener/dycone documentation built on May 13, 2019, 2:41 p.m.